The biology/p5-Bio-Variation port
p5-Bio-Variation-1.7.5 – bioperl variation-related functionality (cvsweb github mirror)
Description
Bio::Variation name space contains modules to store sequence variation information as differences between the reference sequence and changes sequences. Also included are classes to write out and recrete objects from EMBL-like flat files and XML. Lastly, there are simple classes to calculate values for sequence change objects.WWW: https://metacpan.org/release/Bio-Variation
Maintainer
The OpenBSD ports mailing-list
Categories
Run dependencies
Test dependencies
Reverse dependencies
Files
- /usr/local/bin/bp_flanks
- /usr/local/libdata/perl5/site_perl/Bio/Variation.pm
- /usr/local/libdata/perl5/site_perl/Bio/Variation/
- /usr/local/libdata/perl5/site_perl/Bio/Variation/AAChange.pm
- /usr/local/libdata/perl5/site_perl/Bio/Variation/AAReverseMutate.pm
- /usr/local/libdata/perl5/site_perl/Bio/Variation/Allele.pm
- /usr/local/libdata/perl5/site_perl/Bio/Variation/DNAMutation.pm
- /usr/local/libdata/perl5/site_perl/Bio/Variation/IO.pm
- /usr/local/libdata/perl5/site_perl/Bio/Variation/IO/
- /usr/local/libdata/perl5/site_perl/Bio/Variation/IO/flat.pm
- /usr/local/libdata/perl5/site_perl/Bio/Variation/IO/xml.pm
- /usr/local/libdata/perl5/site_perl/Bio/Variation/RNAChange.pm
- /usr/local/libdata/perl5/site_perl/Bio/Variation/SNP.pm
- /usr/local/libdata/perl5/site_perl/Bio/Variation/SeqDiff.pm
- /usr/local/libdata/perl5/site_perl/Bio/Variation/VariantI.pm
- /usr/local/man/man1/bp_flanks.1
- /usr/local/man/man3p/Bio::Variation.3p
- /usr/local/man/man3p/Bio::Variation::AAChange.3p
- /usr/local/man/man3p/Bio::Variation::AAReverseMutate.3p
- /usr/local/man/man3p/Bio::Variation::Allele.3p
- /usr/local/man/man3p/Bio::Variation::DNAMutation.3p
- /usr/local/man/man3p/Bio::Variation::IO.3p
- /usr/local/man/man3p/Bio::Variation::IO::flat.3p
- /usr/local/man/man3p/Bio::Variation::IO::xml.3p
- /usr/local/man/man3p/Bio::Variation::RNAChange.3p
- /usr/local/man/man3p/Bio::Variation::SNP.3p
- /usr/local/man/man3p/Bio::Variation::SeqDiff.3p
- /usr/local/man/man3p/Bio::Variation::VariantI.3p
- @conflict bioperl-<1.7