The biology/bioperl port

bioperl-1.7.8 – perl tools for bioinformatics (cvsweb github mirror)

Description

BioPerl is a toolkit of perl modules useful in building bioinformatics
solutions in Perl.

WWW: https://bioperl.org/

Maintainer

The OpenBSD ports mailing-list

Run dependencies

Test dependencies

Files

/usr/local/bin/bp_aacomp
/usr/local/bin/bp_bioflat_index
/usr/local/bin/bp_biogetseq
/usr/local/bin/bp_dbsplit
/usr/local/bin/bp_extract_feature_seq
/usr/local/bin/bp_fastam9_to_table
/usr/local/bin/bp_fetch
/usr/local/bin/bp_filter_search
/usr/local/bin/bp_find-blast-matches
/usr/local/bin/bp_gccalc
/usr/local/bin/bp_genbank2gff3
/usr/local/bin/bp_index
/usr/local/bin/bp_local_taxonomydb_query
/usr/local/bin/bp_make_mrna_protein
/usr/local/bin/bp_mask_by_search
/usr/local/bin/bp_mrtrans
/usr/local/bin/bp_mutate
/usr/local/bin/bp_nexus2nh
/usr/local/bin/bp_nrdb
/usr/local/bin/bp_oligo_count
/usr/local/bin/bp_process_gadfly
/usr/local/bin/bp_process_sgd
/usr/local/bin/bp_revtrans-motif
/usr/local/bin/bp_search2alnblocks
/usr/local/bin/bp_search2gff
/usr/local/bin/bp_search2table
/usr/local/bin/bp_search2tribe
/usr/local/bin/bp_seq_length
/usr/local/bin/bp_seqconvert
/usr/local/bin/bp_seqcut
/usr/local/bin/bp_seqpart
/usr/local/bin/bp_seqret
/usr/local/bin/bp_seqretsplit
/usr/local/bin/bp_split_seq
/usr/local/bin/bp_sreformat
/usr/local/bin/bp_taxid4species
/usr/local/bin/bp_taxonomy2tree
/usr/local/bin/bp_translate_seq
/usr/local/bin/bp_tree2pag
/usr/local/bin/bp_unflatten_seq
/usr/local/libdata/perl5/site_perl/Bio/
/usr/local/libdata/perl5/site_perl/Bio/Align/
/usr/local/libdata/perl5/site_perl/Bio/Align/AlignI.pm
/usr/local/libdata/perl5/site_perl/Bio/Align/DNAStatistics.pm
/usr/local/libdata/perl5/site_perl/Bio/Align/PairwiseStatistics.pm
/usr/local/libdata/perl5/site_perl/Bio/Align/ProteinStatistics.pm
/usr/local/libdata/perl5/site_perl/Bio/Align/StatisticsI.pm
/usr/local/libdata/perl5/site_perl/Bio/Align/Utilities.pm
/usr/local/libdata/perl5/site_perl/Bio/AlignIO.pm
/usr/local/libdata/perl5/site_perl/Bio/AlignIO/
/usr/local/libdata/perl5/site_perl/Bio/AlignIO/Handler/
/usr/local/libdata/perl5/site_perl/Bio/AlignIO/Handler/GenericAlignHandler.pm
/usr/local/libdata/perl5/site_perl/Bio/AlignIO/arp.pm
/usr/local/libdata/perl5/site_perl/Bio/AlignIO/bl2seq.pm
/usr/local/libdata/perl5/site_perl/Bio/AlignIO/clustalw.pm
/usr/local/libdata/perl5/site_perl/Bio/AlignIO/emboss.pm
/usr/local/libdata/perl5/site_perl/Bio/AlignIO/fasta.pm
/usr/local/libdata/perl5/site_perl/Bio/AlignIO/largemultifasta.pm
/usr/local/libdata/perl5/site_perl/Bio/AlignIO/maf.pm
/usr/local/libdata/perl5/site_perl/Bio/AlignIO/mase.pm
/usr/local/libdata/perl5/site_perl/Bio/AlignIO/mega.pm
/usr/local/libdata/perl5/site_perl/Bio/AlignIO/meme.pm
/usr/local/libdata/perl5/site_perl/Bio/AlignIO/metafasta.pm
/usr/local/libdata/perl5/site_perl/Bio/AlignIO/msf.pm
/usr/local/libdata/perl5/site_perl/Bio/AlignIO/nexus.pm
/usr/local/libdata/perl5/site_perl/Bio/AlignIO/pfam.pm
/usr/local/libdata/perl5/site_perl/Bio/AlignIO/phylip.pm
/usr/local/libdata/perl5/site_perl/Bio/AlignIO/po.pm
/usr/local/libdata/perl5/site_perl/Bio/AlignIO/proda.pm
/usr/local/libdata/perl5/site_perl/Bio/AlignIO/prodom.pm
/usr/local/libdata/perl5/site_perl/Bio/AlignIO/psi.pm
/usr/local/libdata/perl5/site_perl/Bio/AlignIO/selex.pm
/usr/local/libdata/perl5/site_perl/Bio/AlignIO/xmfa.pm
/usr/local/libdata/perl5/site_perl/Bio/AnalysisI.pm
/usr/local/libdata/perl5/site_perl/Bio/AnalysisParserI.pm
/usr/local/libdata/perl5/site_perl/Bio/AnalysisResultI.pm
/usr/local/libdata/perl5/site_perl/Bio/AnnotatableI.pm
/usr/local/libdata/perl5/site_perl/Bio/Annotation/
/usr/local/libdata/perl5/site_perl/Bio/Annotation/AnnotationFactory.pm
/usr/local/libdata/perl5/site_perl/Bio/Annotation/Collection.pm
/usr/local/libdata/perl5/site_perl/Bio/Annotation/Comment.pm
/usr/local/libdata/perl5/site_perl/Bio/Annotation/DBLink.pm
/usr/local/libdata/perl5/site_perl/Bio/Annotation/OntologyTerm.pm
/usr/local/libdata/perl5/site_perl/Bio/Annotation/Reference.pm
/usr/local/libdata/perl5/site_perl/Bio/Annotation/Relation.pm
/usr/local/libdata/perl5/site_perl/Bio/Annotation/SimpleValue.pm
/usr/local/libdata/perl5/site_perl/Bio/Annotation/StructuredValue.pm
/usr/local/libdata/perl5/site_perl/Bio/Annotation/TagTree.pm
/usr/local/libdata/perl5/site_perl/Bio/Annotation/Target.pm
/usr/local/libdata/perl5/site_perl/Bio/Annotation/Tree.pm
/usr/local/libdata/perl5/site_perl/Bio/Annotation/TypeManager.pm
/usr/local/libdata/perl5/site_perl/Bio/AnnotationCollectionI.pm
/usr/local/libdata/perl5/site_perl/Bio/AnnotationI.pm
/usr/local/libdata/perl5/site_perl/Bio/CodonUsage/
/usr/local/libdata/perl5/site_perl/Bio/CodonUsage/IO.pm
/usr/local/libdata/perl5/site_perl/Bio/CodonUsage/Table.pm
/usr/local/libdata/perl5/site_perl/Bio/DB/
/usr/local/libdata/perl5/site_perl/Bio/DB/DBFetch.pm
/usr/local/libdata/perl5/site_perl/Bio/DB/Failover.pm
/usr/local/libdata/perl5/site_perl/Bio/DB/Fasta.pm
/usr/local/libdata/perl5/site_perl/Bio/DB/FileCache.pm
/usr/local/libdata/perl5/site_perl/Bio/DB/Flat.pm
/usr/local/libdata/perl5/site_perl/Bio/DB/Flat/
/usr/local/libdata/perl5/site_perl/Bio/DB/Flat/BDB.pm
/usr/local/libdata/perl5/site_perl/Bio/DB/Flat/BDB/
/usr/local/libdata/perl5/site_perl/Bio/DB/Flat/BDB/embl.pm
/usr/local/libdata/perl5/site_perl/Bio/DB/Flat/BDB/fasta.pm
/usr/local/libdata/perl5/site_perl/Bio/DB/Flat/BDB/genbank.pm
/usr/local/libdata/perl5/site_perl/Bio/DB/Flat/BDB/swiss.pm
/usr/local/libdata/perl5/site_perl/Bio/DB/Flat/BinarySearch.pm
/usr/local/libdata/perl5/site_perl/Bio/DB/GFF/
/usr/local/libdata/perl5/site_perl/Bio/DB/GFF/Util/
/usr/local/libdata/perl5/site_perl/Bio/DB/GFF/Util/Binning.pm
/usr/local/libdata/perl5/site_perl/Bio/DB/GFF/Util/Rearrange.pm
/usr/local/libdata/perl5/site_perl/Bio/DB/GenericWebAgent.pm
/usr/local/libdata/perl5/site_perl/Bio/DB/InMemoryCache.pm
/usr/local/libdata/perl5/site_perl/Bio/DB/IndexedBase.pm
/usr/local/libdata/perl5/site_perl/Bio/DB/LocationI.pm
/usr/local/libdata/perl5/site_perl/Bio/DB/Qual.pm
/usr/local/libdata/perl5/site_perl/Bio/DB/Query/
/usr/local/libdata/perl5/site_perl/Bio/DB/Query/WebQuery.pm
/usr/local/libdata/perl5/site_perl/Bio/DB/QueryI.pm
/usr/local/libdata/perl5/site_perl/Bio/DB/RandomAccessI.pm
/usr/local/libdata/perl5/site_perl/Bio/DB/ReferenceI.pm
/usr/local/libdata/perl5/site_perl/Bio/DB/Registry.pm
/usr/local/libdata/perl5/site_perl/Bio/DB/SeqI.pm
/usr/local/libdata/perl5/site_perl/Bio/DB/Taxonomy.pm
/usr/local/libdata/perl5/site_perl/Bio/DB/Taxonomy/
/usr/local/libdata/perl5/site_perl/Bio/DB/Taxonomy/flatfile.pm
/usr/local/libdata/perl5/site_perl/Bio/DB/Taxonomy/greengenes.pm
/usr/local/libdata/perl5/site_perl/Bio/DB/Taxonomy/list.pm
/usr/local/libdata/perl5/site_perl/Bio/DB/Taxonomy/silva.pm
/usr/local/libdata/perl5/site_perl/Bio/DB/UpdateableSeqI.pm
/usr/local/libdata/perl5/site_perl/Bio/DB/WebDBSeqI.pm
/usr/local/libdata/perl5/site_perl/Bio/DBLinkContainerI.pm
/usr/local/libdata/perl5/site_perl/Bio/Das/
/usr/local/libdata/perl5/site_perl/Bio/Das/FeatureTypeI.pm
/usr/local/libdata/perl5/site_perl/Bio/Das/SegmentI.pm
/usr/local/libdata/perl5/site_perl/Bio/DasI.pm
/usr/local/libdata/perl5/site_perl/Bio/DescribableI.pm
/usr/local/libdata/perl5/site_perl/Bio/Event/
/usr/local/libdata/perl5/site_perl/Bio/Event/EventGeneratorI.pm
/usr/local/libdata/perl5/site_perl/Bio/Event/EventHandlerI.pm
/usr/local/libdata/perl5/site_perl/Bio/Factory/
/usr/local/libdata/perl5/site_perl/Bio/Factory/AnalysisI.pm
/usr/local/libdata/perl5/site_perl/Bio/Factory/ApplicationFactoryI.pm
/usr/local/libdata/perl5/site_perl/Bio/Factory/DriverFactory.pm
/usr/local/libdata/perl5/site_perl/Bio/Factory/FTLocationFactory.pm
/usr/local/libdata/perl5/site_perl/Bio/Factory/LocationFactoryI.pm
/usr/local/libdata/perl5/site_perl/Bio/Factory/ObjectBuilderI.pm
/usr/local/libdata/perl5/site_perl/Bio/Factory/ObjectFactory.pm
/usr/local/libdata/perl5/site_perl/Bio/Factory/ObjectFactoryI.pm
/usr/local/libdata/perl5/site_perl/Bio/Factory/SeqAnalysisParserFactory.pm
/usr/local/libdata/perl5/site_perl/Bio/Factory/SeqAnalysisParserFactoryI.pm
/usr/local/libdata/perl5/site_perl/Bio/Factory/SequenceFactoryI.pm
/usr/local/libdata/perl5/site_perl/Bio/Factory/SequenceProcessorI.pm
/usr/local/libdata/perl5/site_perl/Bio/Factory/SequenceStreamI.pm
/usr/local/libdata/perl5/site_perl/Bio/Factory/TreeFactoryI.pm
/usr/local/libdata/perl5/site_perl/Bio/FeatureHolderI.pm
/usr/local/libdata/perl5/site_perl/Bio/HandlerBaseI.pm
/usr/local/libdata/perl5/site_perl/Bio/IdCollectionI.pm
/usr/local/libdata/perl5/site_perl/Bio/IdentifiableI.pm
/usr/local/libdata/perl5/site_perl/Bio/Index/
/usr/local/libdata/perl5/site_perl/Bio/Index/Abstract.pm
/usr/local/libdata/perl5/site_perl/Bio/Index/AbstractSeq.pm
/usr/local/libdata/perl5/site_perl/Bio/Index/Blast.pm
/usr/local/libdata/perl5/site_perl/Bio/Index/BlastTable.pm
/usr/local/libdata/perl5/site_perl/Bio/Index/EMBL.pm
/usr/local/libdata/perl5/site_perl/Bio/Index/Fasta.pm
/usr/local/libdata/perl5/site_perl/Bio/Index/Fastq.pm
/usr/local/libdata/perl5/site_perl/Bio/Index/GenBank.pm
/usr/local/libdata/perl5/site_perl/Bio/Index/Qual.pm
/usr/local/libdata/perl5/site_perl/Bio/Index/SwissPfam.pm
/usr/local/libdata/perl5/site_perl/Bio/Index/Swissprot.pm
/usr/local/libdata/perl5/site_perl/Bio/LocatableSeq.pm
/usr/local/libdata/perl5/site_perl/Bio/Location/
/usr/local/libdata/perl5/site_perl/Bio/Location/Atomic.pm
/usr/local/libdata/perl5/site_perl/Bio/Location/AvWithinCoordPolicy.pm
/usr/local/libdata/perl5/site_perl/Bio/Location/CoordinatePolicyI.pm
/usr/local/libdata/perl5/site_perl/Bio/Location/Fuzzy.pm
/usr/local/libdata/perl5/site_perl/Bio/Location/FuzzyLocationI.pm
/usr/local/libdata/perl5/site_perl/Bio/Location/NarrowestCoordPolicy.pm
/usr/local/libdata/perl5/site_perl/Bio/Location/Simple.pm
/usr/local/libdata/perl5/site_perl/Bio/Location/Split.pm
/usr/local/libdata/perl5/site_perl/Bio/Location/SplitLocationI.pm
/usr/local/libdata/perl5/site_perl/Bio/Location/WidestCoordPolicy.pm
/usr/local/libdata/perl5/site_perl/Bio/LocationI.pm
/usr/local/libdata/perl5/site_perl/Bio/Matrix/
/usr/local/libdata/perl5/site_perl/Bio/Matrix/Generic.pm
/usr/local/libdata/perl5/site_perl/Bio/Matrix/IO.pm
/usr/local/libdata/perl5/site_perl/Bio/Matrix/IO/
/usr/local/libdata/perl5/site_perl/Bio/Matrix/IO/mlagan.pm
/usr/local/libdata/perl5/site_perl/Bio/Matrix/IO/phylip.pm
/usr/local/libdata/perl5/site_perl/Bio/Matrix/IO/scoring.pm
/usr/local/libdata/perl5/site_perl/Bio/Matrix/MatrixI.pm
/usr/local/libdata/perl5/site_perl/Bio/Matrix/Mlagan.pm
/usr/local/libdata/perl5/site_perl/Bio/Matrix/PSM/
/usr/local/libdata/perl5/site_perl/Bio/Matrix/PSM/IO.pm
/usr/local/libdata/perl5/site_perl/Bio/Matrix/PSM/IO/
/usr/local/libdata/perl5/site_perl/Bio/Matrix/PSM/IO/mast.pm
/usr/local/libdata/perl5/site_perl/Bio/Matrix/PSM/IO/masta.pm
/usr/local/libdata/perl5/site_perl/Bio/Matrix/PSM/IO/meme.pm
/usr/local/libdata/perl5/site_perl/Bio/Matrix/PSM/IO/psiblast.pm
/usr/local/libdata/perl5/site_perl/Bio/Matrix/PSM/IO/transfac.pm
/usr/local/libdata/perl5/site_perl/Bio/Matrix/PSM/InstanceSite.pm
/usr/local/libdata/perl5/site_perl/Bio/Matrix/PSM/InstanceSiteI.pm
/usr/local/libdata/perl5/site_perl/Bio/Matrix/PSM/ProtMatrix.pm
/usr/local/libdata/perl5/site_perl/Bio/Matrix/PSM/ProtPsm.pm
/usr/local/libdata/perl5/site_perl/Bio/Matrix/PSM/Psm.pm
/usr/local/libdata/perl5/site_perl/Bio/Matrix/PSM/PsmHeader.pm
/usr/local/libdata/perl5/site_perl/Bio/Matrix/PSM/PsmHeaderI.pm
/usr/local/libdata/perl5/site_perl/Bio/Matrix/PSM/PsmI.pm
/usr/local/libdata/perl5/site_perl/Bio/Matrix/PSM/SiteMatrix.pm
/usr/local/libdata/perl5/site_perl/Bio/Matrix/PSM/SiteMatrixI.pm
/usr/local/libdata/perl5/site_perl/Bio/Matrix/PhylipDist.pm
/usr/local/libdata/perl5/site_perl/Bio/Matrix/Scoring.pm
/usr/local/libdata/perl5/site_perl/Bio/Ontology/
/usr/local/libdata/perl5/site_perl/Bio/Ontology/DocumentRegistry.pm
/usr/local/libdata/perl5/site_perl/Bio/Ontology/GOterm.pm
/usr/local/libdata/perl5/site_perl/Bio/Ontology/InterProTerm.pm
/usr/local/libdata/perl5/site_perl/Bio/Ontology/OBOEngine.pm
/usr/local/libdata/perl5/site_perl/Bio/Ontology/OBOterm.pm
/usr/local/libdata/perl5/site_perl/Bio/Ontology/Ontology.pm
/usr/local/libdata/perl5/site_perl/Bio/Ontology/OntologyEngineI.pm
/usr/local/libdata/perl5/site_perl/Bio/Ontology/OntologyI.pm
/usr/local/libdata/perl5/site_perl/Bio/Ontology/OntologyStore.pm
/usr/local/libdata/perl5/site_perl/Bio/Ontology/Path.pm
/usr/local/libdata/perl5/site_perl/Bio/Ontology/PathI.pm
/usr/local/libdata/perl5/site_perl/Bio/Ontology/Relationship.pm
/usr/local/libdata/perl5/site_perl/Bio/Ontology/RelationshipFactory.pm
/usr/local/libdata/perl5/site_perl/Bio/Ontology/RelationshipI.pm
/usr/local/libdata/perl5/site_perl/Bio/Ontology/RelationshipType.pm
/usr/local/libdata/perl5/site_perl/Bio/Ontology/SimpleGOEngine/
/usr/local/libdata/perl5/site_perl/Bio/Ontology/SimpleGOEngine/GraphAdaptor.pm
/usr/local/libdata/perl5/site_perl/Bio/Ontology/SimpleOntologyEngine.pm
/usr/local/libdata/perl5/site_perl/Bio/Ontology/Term.pm
/usr/local/libdata/perl5/site_perl/Bio/Ontology/TermFactory.pm
/usr/local/libdata/perl5/site_perl/Bio/Ontology/TermI.pm
/usr/local/libdata/perl5/site_perl/Bio/OntologyIO.pm
/usr/local/libdata/perl5/site_perl/Bio/OntologyIO/
/usr/local/libdata/perl5/site_perl/Bio/OntologyIO/Handlers/
/usr/local/libdata/perl5/site_perl/Bio/OntologyIO/Handlers/BaseSAXHandler.pm
/usr/local/libdata/perl5/site_perl/Bio/OntologyIO/Handlers/InterProHandler.pm
/usr/local/libdata/perl5/site_perl/Bio/OntologyIO/Handlers/InterPro_BioSQL_Handler.pm
/usr/local/libdata/perl5/site_perl/Bio/OntologyIO/InterProParser.pm
/usr/local/libdata/perl5/site_perl/Bio/OntologyIO/dagflat.pm
/usr/local/libdata/perl5/site_perl/Bio/OntologyIO/goflat.pm
/usr/local/libdata/perl5/site_perl/Bio/OntologyIO/obo.pm
/usr/local/libdata/perl5/site_perl/Bio/OntologyIO/simplehierarchy.pm
/usr/local/libdata/perl5/site_perl/Bio/OntologyIO/soflat.pm
/usr/local/libdata/perl5/site_perl/Bio/ParameterBaseI.pm
/usr/local/libdata/perl5/site_perl/Bio/PrimarySeq.pm
/usr/local/libdata/perl5/site_perl/Bio/PrimarySeqI.pm
/usr/local/libdata/perl5/site_perl/Bio/PullParserI.pm
/usr/local/libdata/perl5/site_perl/Bio/Range.pm
/usr/local/libdata/perl5/site_perl/Bio/RangeI.pm
/usr/local/libdata/perl5/site_perl/Bio/Root/
/usr/local/libdata/perl5/site_perl/Bio/Root/Exception.pm
/usr/local/libdata/perl5/site_perl/Bio/Root/HTTPget.pm
/usr/local/libdata/perl5/site_perl/Bio/Root/IO.pm
/usr/local/libdata/perl5/site_perl/Bio/Root/Root.pm
/usr/local/libdata/perl5/site_perl/Bio/Root/RootI.pm
/usr/local/libdata/perl5/site_perl/Bio/Root/Storable.pm
/usr/local/libdata/perl5/site_perl/Bio/Root/Test.pm
/usr/local/libdata/perl5/site_perl/Bio/Root/TestObject.pm
/usr/local/libdata/perl5/site_perl/Bio/Root/Utilities.pm
/usr/local/libdata/perl5/site_perl/Bio/Root/Version.pm
/usr/local/libdata/perl5/site_perl/Bio/Search/
/usr/local/libdata/perl5/site_perl/Bio/Search/BlastStatistics.pm
/usr/local/libdata/perl5/site_perl/Bio/Search/BlastUtils.pm
/usr/local/libdata/perl5/site_perl/Bio/Search/DatabaseI.pm
/usr/local/libdata/perl5/site_perl/Bio/Search/GenericDatabase.pm
/usr/local/libdata/perl5/site_perl/Bio/Search/GenericStatistics.pm
/usr/local/libdata/perl5/site_perl/Bio/Search/HSP/
/usr/local/libdata/perl5/site_perl/Bio/Search/HSP/BlastHSP.pm
/usr/local/libdata/perl5/site_perl/Bio/Search/HSP/BlastPullHSP.pm
/usr/local/libdata/perl5/site_perl/Bio/Search/HSP/FastaHSP.pm
/usr/local/libdata/perl5/site_perl/Bio/Search/HSP/GenericHSP.pm
/usr/local/libdata/perl5/site_perl/Bio/Search/HSP/HSPFactory.pm
/usr/local/libdata/perl5/site_perl/Bio/Search/HSP/HSPI.pm
/usr/local/libdata/perl5/site_perl/Bio/Search/HSP/ModelHSP.pm
/usr/local/libdata/perl5/site_perl/Bio/Search/HSP/PSLHSP.pm
/usr/local/libdata/perl5/site_perl/Bio/Search/HSP/PsiBlastHSP.pm
/usr/local/libdata/perl5/site_perl/Bio/Search/HSP/PullHSPI.pm
/usr/local/libdata/perl5/site_perl/Bio/Search/HSP/WABAHSP.pm
/usr/local/libdata/perl5/site_perl/Bio/Search/Hit/
/usr/local/libdata/perl5/site_perl/Bio/Search/Hit/BlastHit.pm
/usr/local/libdata/perl5/site_perl/Bio/Search/Hit/BlastPullHit.pm
/usr/local/libdata/perl5/site_perl/Bio/Search/Hit/Fasta.pm
/usr/local/libdata/perl5/site_perl/Bio/Search/Hit/GenericHit.pm
/usr/local/libdata/perl5/site_perl/Bio/Search/Hit/HitFactory.pm
/usr/local/libdata/perl5/site_perl/Bio/Search/Hit/HitI.pm
/usr/local/libdata/perl5/site_perl/Bio/Search/Hit/ModelHit.pm
/usr/local/libdata/perl5/site_perl/Bio/Search/Hit/PsiBlastHit.pm
/usr/local/libdata/perl5/site_perl/Bio/Search/Hit/PullHitI.pm
/usr/local/libdata/perl5/site_perl/Bio/Search/Iteration/
/usr/local/libdata/perl5/site_perl/Bio/Search/Iteration/GenericIteration.pm
/usr/local/libdata/perl5/site_perl/Bio/Search/Iteration/IterationI.pm
/usr/local/libdata/perl5/site_perl/Bio/Search/Processor.pm
/usr/local/libdata/perl5/site_perl/Bio/Search/Result/
/usr/local/libdata/perl5/site_perl/Bio/Search/Result/BlastPullResult.pm
/usr/local/libdata/perl5/site_perl/Bio/Search/Result/BlastResult.pm
/usr/local/libdata/perl5/site_perl/Bio/Search/Result/CrossMatchResult.pm
/usr/local/libdata/perl5/site_perl/Bio/Search/Result/GenericResult.pm
/usr/local/libdata/perl5/site_perl/Bio/Search/Result/INFERNALResult.pm
/usr/local/libdata/perl5/site_perl/Bio/Search/Result/PullResultI.pm
/usr/local/libdata/perl5/site_perl/Bio/Search/Result/ResultFactory.pm
/usr/local/libdata/perl5/site_perl/Bio/Search/Result/ResultI.pm
/usr/local/libdata/perl5/site_perl/Bio/Search/Result/WABAResult.pm
/usr/local/libdata/perl5/site_perl/Bio/Search/SearchUtils.pm
/usr/local/libdata/perl5/site_perl/Bio/Search/StatisticsI.pm
/usr/local/libdata/perl5/site_perl/Bio/Search/Tiling/
/usr/local/libdata/perl5/site_perl/Bio/Search/Tiling/MapTileUtils.pm
/usr/local/libdata/perl5/site_perl/Bio/Search/Tiling/MapTiling.pm
/usr/local/libdata/perl5/site_perl/Bio/Search/Tiling/TilingI.pm
/usr/local/libdata/perl5/site_perl/Bio/SearchIO.pm
/usr/local/libdata/perl5/site_perl/Bio/SearchIO/
/usr/local/libdata/perl5/site_perl/Bio/SearchIO/EventHandlerI.pm
/usr/local/libdata/perl5/site_perl/Bio/SearchIO/FastHitEventBuilder.pm
/usr/local/libdata/perl5/site_perl/Bio/SearchIO/IteratedSearchResultEventBuilder.pm
/usr/local/libdata/perl5/site_perl/Bio/SearchIO/SearchResultEventBuilder.pm
/usr/local/libdata/perl5/site_perl/Bio/SearchIO/SearchWriterI.pm
/usr/local/libdata/perl5/site_perl/Bio/SearchIO/Writer/
/usr/local/libdata/perl5/site_perl/Bio/SearchIO/Writer/GbrowseGFF.pm
/usr/local/libdata/perl5/site_perl/Bio/SearchIO/Writer/HSPTableWriter.pm
/usr/local/libdata/perl5/site_perl/Bio/SearchIO/Writer/HTMLResultWriter.pm
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The biology/bioperl port

bioperl-1.7.8 – perl tools for bioinformatics (cvsweb github mirror)

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Test dependencies

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